| RNAi Experiment: Simmer:F45F2.3 |
Ace View of Simmer:F45F2.3
|
| Genes Inhibited |
 |
| Gene Inhibited |
F45F2.3 (his-5) |
| Description of "F45F2.3" |
his-5 encodes an H4 histone. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:8537568..8538241)
Transcript overlap: 379 nt |
|
| Sliding Window |
Raw score: 337
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.245 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F45F2.3" Links |
  |
| Gene Inhibited |
K06C4.2 (his-28) |
| Description of "K06C4.2" |
his-28 encodes an H4 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 247
Specificity index: 0.179 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.2" Links |
|
| Gene Inhibited |
K06C4.10 (his-18) |
| Description of "K06C4.10" |
his-18 encodes an H4 histone; by homology, HIS-18 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-18 is a replication-dependent histone locus that resides in the HIS4 cluster on chromosome V. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 227
Relative score: 0.674 (Best raw score= for Gene )
Specificity index: 0.165 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.10" Links |
|
| Gene Inhibited |
K03A1.6 (his-38) |
| Description of "K03A1.6" |
his-38 encodes an H4 histone; by homology, HIS-38 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-38 is a replication-dependent histone locus that does not reside in a cluster, but exists as a single histone locus on the X chromosome. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 126
Relative score: 0.374 (Best raw score= for Gene )
Specificity index: 0.092 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "K03A1.6" Links |
|
| Gene Inhibited |
T10C6.14 (his-1) |
| Description of "T10C6.14" |
his-1 encodes an H4 histone; his-1 is contained within the histone gene cluster HIS1; transcript analysis suggests that it encodes the major class of H4 transcripts. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 107
Relative score: 0.318 (Best raw score= for Gene )
Specificity index: 0.078 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T10C6.14" Links |
|
| Gene Inhibited |
F07B7.9 (his-50) |
| Description of "F07B7.9" |
his-50 encodes an H4 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 247
Relative score: 0.733 (Best raw score= for Gene )
Specificity index: 0.179 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.9" Links |
|
| Gene Inhibited |
F22B3.1 (his-64) |
| Description of "F22B3.1" |
his-64 encodes an H4 histone. |
| KOG Annotation |
Histone H4
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 86
Relative score: 0.255 (Best raw score= for Gene )
Specificity index: 0.062 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F22B3.1" Links |
|
| Simmer:F45F2.3 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 100 % |
| Larval |
Lva
|
| Simmer:F45F2.3 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_F45F2.3 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of K06C4.10 |
Browse using GBrowse
|
 |
| Gene Plot of K06C4.2 |
Browse using GBrowse
|
 |
| Gene Plot of K03A1.6 |
Browse using GBrowse
|
 |
| Gene Plot of T10C6.14 |
Browse using GBrowse
|
 |
| Gene Plot of F45F2.3 |
Browse using GBrowse
|
 |
| Gene Plot of F22B3.1 |
Browse using GBrowse
|
 |
| Gene Plot of F07B7.9 |
Browse using GBrowse
|
 |
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