| RNAi Experiment: Simmer:F45F2.4 |
Ace View of Simmer:F45F2.4
|
| Genes Inhibited |
 |
| Gene Inhibited |
F45F2.4 (his-7) |
| Description of "F45F2.4" |
his-7 encodes an H2A histone. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:8535825..8536508)
Transcript overlap: 384 nt |
|
| Sliding Window |
Raw score: 342
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.17 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F45F2.4" Links |
  |
| Gene Inhibited |
F07B7.10 (his-51) |
| Description of "F07B7.10" |
his-51 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 297
Specificity index: 0.147 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.10" Links |
|
| Gene Inhibited |
F17E9.13 (his-33) |
| Description of "F17E9.13" |
his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.13" Links |
|
| Gene Inhibited |
F07B7.3 (his-53) |
| Description of "F07B7.3" |
his-53 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 297
Specificity index: 0.147 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.3" Links |
|
| Gene Inhibited |
K06C4.3 (his-21) |
| Description of "K06C4.3" |
his-21 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 297
Relative score: 0.868 (Best raw score= for Gene )
Specificity index: 0.147 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.3" Links |
|
| Gene Inhibited |
F08G2.2 (his-43) |
| Description of "F08G2.2" |
his-43 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 111
Relative score: 0.325 (Best raw score= for Gene )
Specificity index: 0.055 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.2" Links |
|
| Gene Inhibited |
T10C6.12 (his-3) |
| Description of "T10C6.12" |
his-3 encodes an H2A histone; by homology, HIS-3 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-3 is a replication-dependent histone locus that resides in the HIS1 cluster on chromosome V. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 243
Relative score: 0.711 (Best raw score= for Gene )
Specificity index: 0.121 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T10C6.12" Links |
|
| Gene Inhibited |
ZK131.10 (his-16) |
| Description of "ZK131.10" |
his-16 encodes an H2A histone; his-16 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 90
Relative score: 0.263 (Best raw score= for Gene )
Specificity index: 0.045 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.10" Links |
|
| Gene Inhibited |
ZK131.6 (his-12) |
| Description of "ZK131.6" |
his-12 encodes an H2A histone; his-12 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 82
Relative score: 0.24 (Best raw score= for Gene )
Specificity index: 0.041 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.6" Links |
|
| Gene Inhibited |
K06C4.11 (his-19) |
| Description of "K06C4.11" |
his-19 encodes an H2A histone; his-19 is contained within the histone gene cluster HIS4. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 255
Relative score: 0.746 (Best raw score= for Gene )
Specificity index: 0.127 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.11" Links |
|
| Gene Inhibited |
F35H10.1 (his-30) |
| Description of "F35H10.1" |
his-30 encodes an H2A histone; by homology, HIS-30 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-30 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.1" Links |
|
| Simmer:F45F2.4 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 100 % |
| Larval |
Lva
|
| Adult |
Unc
|
| Simmer:F45F2.4 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_F45F2.4 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F17E9.13 |
Browse using GBrowse
|
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| Gene Plot of F07B7.10 |
Browse using GBrowse
|
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| Gene Plot of F45F2.4 |
Browse using GBrowse
|
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| Gene Plot of F08G2.2 |
Browse using GBrowse
|
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| Gene Plot of K06C4.3 |
Browse using GBrowse
|
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| Gene Plot of F07B7.3 |
Browse using GBrowse
|
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| Gene Plot of ZK131.10 |
Browse using GBrowse
|
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| Gene Plot of T10C6.12 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.6 |
Browse using GBrowse
|
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| Gene Plot of F35H10.1 |
Browse using GBrowse
|
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| Gene Plot of K06C4.11 |
Browse using GBrowse
|
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