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RNAi Experiment: Simmer:F48E8.5 Ace View of Simmer:F48E8.5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F48E8.5 (paa-1)
Description of "F48E8.5"  paa-1 encodes a homolog of PR65, the structural subunit of protein phosphatase 2A (PP2A); PAA-1 protein is bound by SMG-5; PAA-1 is required in mass RNAi assays for embryonic viability, fertility, and cuticular integrity.
KOG Annotation  Protein phosphatase 2A regulatory subunit A and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:5450787..5451968)
Transcript overlap: 1131 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1089
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F48E8.5" Links  Wormbase NCBI
Simmer:F48E8.5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:F48E8.5 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F48E8.5 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F48E8.5 Browse using GBrowse
Gene Graph