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RNAi Experiment: Simmer:F53B2.1:Screen Ace View of Simmer:F53B2.1:Screen
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F53B2.1
Description of "F53B2.1"  Associated GO Term : transferase activity, transferring hexosyl groups
KOG Annotation  G-patch nucleic acid binding protein
UDP-glucuronosyl and UDP-glucosyl transferase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:12516181..12518138)
Transcript overlap: 897 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 813
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.733
Wormbase (BLAST) RNAi primary
External "F53B2.1" Links  Wormbase NCBI
Gene Inhibited  R11A8.2
Description of "R11A8.2"  Associated GO Term : nucleic acid binding
KOG Annotation  G-patch nucleic acid binding protein
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 210
Relative score: 0.258 (Best raw score= for Gene )
Specificity index: 0.189
Wormbase (BLAST) RNAi primary
External "R11A8.2" Links  Wormbase NCBI
Gene Inhibited  R11A8.3 (ugt-59)
Description of "R11A8.3"  Associated GO Term : transferase activity, transferring hexosyl groups
KOG Annotation  UDP-glucuronosyl and UDP-glucosyl transferase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 86
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.078
Wormbase (BLAST) RNAi primary
External "R11A8.3" Links  Wormbase NCBI
Simmer:F53B2.1:Screen Phenotypes Help with Phenotypes
Adult  Stp
Unc
Simmer:F53B2.1:Screen Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F53B2.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of R11A8.3 Browse using GBrowse
Gene Graph
Gene Plot of R11A8.2 Browse using GBrowse
Gene Graph
Gene Plot of F53B2.1 Browse using GBrowse
Gene Graph