| RNAi Experiment: Simmer:F54B11.2:Repeat_a |
Ace View of Simmer:F54B11.2:Repeat_a
|
| Genes Inhibited |
 |
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (X:13591668..13592435)
Transcript overlap: 714 nt |
|
| Sliding Window |
Raw score: 630
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.31 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54B11.2" Links |
  |
| Gene Inhibited |
ZK1010.7 (col-97) |
| Description of "ZK1010.7" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 352
Relative score: 0.559 (Best raw score= for Gene )
Specificity index: 0.173 |
|
| External "ZK1010.7" Links |
|
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 197
Relative score: 0.313 (Best raw score= for Gene )
Specificity index: 0.097 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
Y41E3.2 (dpy-4) |
| Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 122
Relative score: 0.194 (Best raw score= for Gene )
Specificity index: 0.06 |
|
| External "Y41E3.2" Links |
|
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 284
Relative score: 0.451 (Best raw score= for Gene )
Specificity index: 0.14 |
|
| External "Y54E10BL.2" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 243
Relative score: 0.386 (Best raw score= for Gene )
Specificity index: 0.119 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 62
Relative score: 0.098 (Best raw score= for Gene )
Specificity index: 0.03 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
T28F2.8 (col-51) |
| Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 144
Relative score: 0.229 (Best raw score= for Gene )
Specificity index: 0.071 |
|
| External "T28F2.8" Links |
|
| Simmer:F54B11.2:Repeat_a Phenotypes |
|
|
| Phenotype |
WT
|
| Simmer:F54B11.2:Repeat_a Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_F54B11.2 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of ZK1010.7 |
Browse using GBrowse
|
 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54B11.2 |
Browse using GBrowse
|
 |
| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
 |
| Gene Plot of Y41E3.2 |
Browse using GBrowse
|
 |
| Gene Plot of ZC513.8 |
Browse using GBrowse
|
 |
| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
 |
| Gene Plot of T28F2.8 |
Browse using GBrowse
|
 |
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