| RNAi Experiment: Simmer:F55C10.2:Screen |
Ace View of Simmer:F55C10.2:Screen
|
| Genes Inhibited |
 |
| Gene Inhibited |
F55C10.2 (col-154) |
| Description of "F55C10.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:11388018..11389035)
Transcript overlap: 875 nt |
|
| Sliding Window |
Raw score: 812
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.26 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55C10.2" Links |
  |
| Gene Inhibited |
T11F9.9 (col-157) |
| Description of "T11F9.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 386
Relative score: 0.475 (Best raw score= for Gene )
Specificity index: 0.123 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T11F9.9" Links |
|
| Gene Inhibited |
T28C6.4 (col-117) |
| Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 71
Specificity index: 0.023 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T28C6.4" Links |
|
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 186
Relative score: 0.229 (Best raw score= for Gene )
Specificity index: 0.059 |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
F55C10.3 (col-155) |
| Description of "F55C10.3" |
Associated GO Term : phosphate transport |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 637
Relative score: 0.784 (Best raw score= for Gene )
Specificity index: 0.204 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55C10.3" Links |
|
| Gene Inhibited |
T28C6.6 (col-3) |
| Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 71
Relative score: 0.087 (Best raw score= for Gene )
Specificity index: 0.023 |
|
| External "T28C6.6" Links |
|
| Gene Inhibited |
T11B7.3 (col-118) |
| Description of "T11B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 308
Relative score: 0.379 (Best raw score= for Gene )
Specificity index: 0.098 |
|
| External "T11B7.3" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 126
Relative score: 0.155 (Best raw score= for Gene )
Specificity index: 0.04 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
F33D11.3 (col-54) |
| Description of "F33D11.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 287
Relative score: 0.353 (Best raw score= for Gene )
Specificity index: 0.092 |
|
| External "F33D11.3" Links |
|
| Gene Inhibited |
F11G11.10 (col-17) |
| Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 171
Relative score: 0.211 (Best raw score= for Gene )
Specificity index: 0.055 |
|
| External "F11G11.10" Links |
|
| Gene Inhibited |
C29F4.1 (col-125) |
| Description of "C29F4.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 73
Relative score: 0.09 (Best raw score= for Gene )
Specificity index: 0.023 |
|
| External "C29F4.1" Links |
|
| Simmer:F55C10.2:Screen Phenotypes |
|
|
| Adult |
Bmd
Dpy
Unc
|
| Simmer:F55C10.2:Screen Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_F55C10.2 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of T28C6.4 |
Browse using GBrowse
|
 |
| Gene Plot of T11F9.9 |
Browse using GBrowse
|
 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.3 |
Browse using GBrowse
|
 |
| Gene Plot of T28C6.6 |
Browse using GBrowse
|
 |
| Gene Plot of T11B7.3 |
Browse using GBrowse
|
 |
| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
 |
| Gene Plot of F33D11.3 |
Browse using GBrowse
|
 |
| Gene Plot of C29F4.1 |
Browse using GBrowse
|
 |
| Gene Plot of F11G11.10 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.2 |
Browse using GBrowse
|
 |
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