| RNAi Experiment: Simmer:F55G1.3 |
Ace View of Simmer:F55G1.3
|
| Genes Inhibited |
 |
| Gene Inhibited |
F55G1.3 (his-62) |
| Description of "F55G1.3" |
his-62 encodes an H2B histone. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:7486329..7487465)
Transcript overlap: 372 nt |
|
| Sliding Window |
Raw score: 330
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.394 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55G1.3" Links |
  |
| Gene Inhibited |
F54E12.4 (his-58) |
| Description of "F54E12.4" |
his-58 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 118
Specificity index: 0.141 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F54E12.4" Links |
|
| Gene Inhibited |
F08G2.1 (his-44) |
| Description of "F08G2.1" |
his-44 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.1" Links |
|
| Gene Inhibited |
F17E9.9 (his-34) |
| Description of "F17E9.9" |
his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 74
Specificity index: 0.088 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.9" Links |
|
| Gene Inhibited |
H02I12.6 (his-66) |
| Description of "H02I12.6" |
his-66 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 118
Relative score: 0.358 (Best raw score= for Gene )
Specificity index: 0.141 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "H02I12.6" Links |
|
| Gene Inhibited |
F35H10.11 (his-29) |
| Description of "F35H10.11" |
his-29 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 74
Relative score: 0.224 (Best raw score= for Gene )
Specificity index: 0.088 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.11" Links |
|
| Gene Inhibited |
B0035.8 (his-48) |
| Description of "B0035.8" |
his-48 encodes an H2B histone; by homology, HIS-48 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-48 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 124
Relative score: 0.376 (Best raw score= for Gene )
Specificity index: 0.148 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "B0035.8" Links |
|
| Simmer:F55G1.3 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 90 % |
| Larval |
Lva
|
| Simmer:F55G1.3 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_F55G1.3 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F54E12.4 |
Browse using GBrowse
|
 |
| Gene Plot of F08G2.1 |
Browse using GBrowse
|
 |
| Gene Plot of F17E9.9 |
Browse using GBrowse
|
 |
| Gene Plot of F35H10.11 |
Browse using GBrowse
|
 |
| Gene Plot of H02I12.6 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.8 |
Browse using GBrowse
|
 |
| Gene Plot of F55G1.3 |
Browse using GBrowse
|
 |
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