RNAi Card Page

RNAi Experiment: Simmer:F56B3.1:Repeat_a

Ace View of Simmer:F56B3.1:Repeat_a

Genes Inhibited

Gene Inhibited

F56B3.1 (col-103)

Description of "F56B3.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (IV:762536..763535) Transcript overlap: 904 nt
Sliding Window	Raw score: 807 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.396
Wormbase (BLAST)	RNAi primary

External "F56B3.1" Links

Gene Inhibited

T15B7.3 (col-143)

Description of "T15B7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 126
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.062

External "T15B7.3" Links

Gene Inhibited

F15H10.1 (col-12)

Description of "F15H10.1"

col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 198
Relative score: 0.245 (Best raw score= for Gene )
Specificity index: 0.097

External "F15H10.1" Links

Gene Inhibited

Y41E3.2 (dpy-4)

Description of "Y41E3.2"

dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 81
Relative score: 0.1 (Best raw score= for Gene )
Specificity index: 0.04

External "Y41E3.2" Links

Gene Inhibited

ZC513.8 (col-43)

Description of "ZC513.8"

col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 112
Relative score: 0.139 (Best raw score= for Gene )
Specificity index: 0.055

External "ZC513.8" Links

Gene Inhibited

F38A3.2 (ram-2)

Description of "F38A3.2"

ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 392
Relative score: 0.486 (Best raw score= for Gene )
Specificity index: 0.192

External "F38A3.2" Links

Gene Inhibited

F15H10.2 (col-13)

Description of "F15H10.2"

col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 177
Relative score: 0.219 (Best raw score= for Gene )
Specificity index: 0.087

External "F15H10.2" Links

Gene Inhibited

T28F2.8 (col-51)

Description of "T28F2.8"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins