RNAi Experiment: Simmer:F56B3.1:Repeat_a |
Ace View of Simmer:F56B3.1:Repeat_a
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Genes Inhibited |
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Gene Inhibited |
F56B3.1 (col-103) |
Description of "F56B3.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:762536..763535)
Transcript overlap: 904 nt |
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Sliding Window |
Raw score: 807
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.396 |
Wormbase (BLAST) |
RNAi primary |
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External "F56B3.1" Links |
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Gene Inhibited |
T15B7.3 (col-143) |
Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 126
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.062 |
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External "T15B7.3" Links |
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Gene Inhibited |
F15H10.1 (col-12) |
Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 198
Relative score: 0.245 (Best raw score= for Gene )
Specificity index: 0.097 |
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External "F15H10.1" Links |
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Gene Inhibited |
Y41E3.2 (dpy-4) |
Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 81
Relative score: 0.1 (Best raw score= for Gene )
Specificity index: 0.04 |
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External "Y41E3.2" Links |
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Gene Inhibited |
ZC513.8 (col-43) |
Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 112
Relative score: 0.139 (Best raw score= for Gene )
Specificity index: 0.055 |
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External "ZC513.8" Links |
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Gene Inhibited |
F38A3.2 (ram-2) |
Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 392
Relative score: 0.486 (Best raw score= for Gene )
Specificity index: 0.192 |
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External "F38A3.2" Links |
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Gene Inhibited |
F15H10.2 (col-13) |
Description of "F15H10.2" |
col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 177
Relative score: 0.219 (Best raw score= for Gene )
Specificity index: 0.087 |
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External "F15H10.2" Links |
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Gene Inhibited |
T28F2.8 (col-51) |
Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 146
Relative score: 0.181 (Best raw score= for Gene )
Specificity index: 0.072 |
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External "T28F2.8" Links |
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Simmer:F56B3.1:Repeat_a Phenotypes |
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Adult |
Unc
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Simmer:F56B3.1:Repeat_a Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_F56B3.1 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of T15B7.3 |
Browse using GBrowse
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Gene Plot of F38A3.2 |
Browse using GBrowse
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Gene Plot of F15H10.2 |
Browse using GBrowse
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Gene Plot of F15H10.1 |
Browse using GBrowse
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Gene Plot of F56B3.1 |
Browse using GBrowse
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Gene Plot of Y41E3.2 |
Browse using GBrowse
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Gene Plot of ZC513.8 |
Browse using GBrowse
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Gene Plot of T28F2.8 |
Browse using GBrowse
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