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RNAi Experiment: Simmer:F56B3.4:Screen Ace View of Simmer:F56B3.4:Screen
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F56B3.4 (skr-18)
Description of "F56B3.4"  skr-18 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-18 has no known function in vivo, since skr-18(RNAi) animals are at least superficially normal.
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:793179..795222)
Transcript overlap: 1036 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 973
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.674
Wormbase (BLAST) RNAi primary
External "F56B3.4" Links  Wormbase NCBI
Gene Inhibited  F56B3.12
KOG Annotation  SCF ubiquitin ligase, Skp1 component
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (IV:793179..795222)
Transcript overlap: 471 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 471
Relative score: 0.484 (Best raw score= for Gene )
Specificity index: 0.326
Wormbase (BLAST) RNAi primary
External "F56B3.12" Links  Wormbase NCBI
Simmer:F56B3.4:Screen Phenotypes Help with Phenotypes
Adult  Pvl
Rup
Stp
Unc
Simmer:F56B3.4:Screen Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F56B3.4 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F56B3.4 Browse using GBrowse
Gene Graph
Gene Plot of F56B3.12 Browse using GBrowse
Gene Graph