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RNAi Experiment: Simmer:F56F3.5 Ace View of Simmer:F56F3.5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F56F3.5 (rps-1)
Description of "F56F3.5"  rps-1 encodes a small ribosomal subunit S3A protein.
KOG Annotation  40S ribosomal protein S3A
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4475921..4477063)
Transcript overlap: 834 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 771
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.82
Wormbase (BLAST) RNAi primary
External "F56F3.5" Links  Wormbase NCBI
Gene Inhibited  F56F3.6 (ins-17)
Description of "F56F3.6"  Associated GO Term : hormone activity
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:4475921..4477063)
Transcript overlap: 209 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 169
Relative score: 0.219 (Best raw score= for Gene )
Specificity index: 0.18
Wormbase (BLAST) RNAi primary
External "F56F3.6" Links  Wormbase NCBI
Simmer:F56F3.5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Lva
Adult  Ste brood size (6 out of 10)
Simmer:F56F3.5 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F56F3.5 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F56F3.6 Browse using GBrowse
Gene Graph
Gene Plot of F56F3.5 Browse using GBrowse
Gene Graph