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RNAi Experiment: Simmer:F58A4.4 Ace View of Simmer:F58A4.4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F58A4.4 (pri-1)
Description of "F58A4.4"  pri-1 encodes a homolog of the DNA polymerase alpha-primase subunit D that is required in embryos for the normal timing of embryonic cell divisions, much as DIV-1 is.
KOG Annotation  Eukaryotic-type DNA primase, catalytic (small) subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:9612958..9614117)
Transcript overlap: 886 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 781
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.827
Wormbase (BLAST) RNAi primary
External "F58A4.4" Links  Wormbase NCBI
Gene Inhibited  T24C4.5
Description of "T24C4.5"  Associated GO Term : DNA primase activity
Evidence for Inhibition 
Sliding Window Raw score: 163
Relative score: 0.209 (Best raw score= for Gene )
Specificity index: 0.173
Wormbase (BLAST) RNAi secondary
External "T24C4.5" Links  Wormbase NCBI
Simmer:F58A4.4 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:F58A4.4 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F58A4.4 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of T24C4.5 Browse using GBrowse
Gene Graph
Gene Plot of F58A4.4 Browse using GBrowse
Gene Graph