RNAi Experiment: Simmer:H02I12.6 |
Ace View of Simmer:H02I12.6
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Genes Inhibited |
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Gene Inhibited |
H02I12.6 (his-66) |
Description of "H02I12.6" |
his-66 encodes an H2B histone. |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:11400103..11400902)
Transcript overlap: 372 nt |
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Sliding Window |
Raw score: 330
Relative score: 0.897 (Best raw score= for Gene )
Specificity index: 0.247 |
Wormbase (BLAST) |
RNAi primary |
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External "H02I12.6" Links |
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Gene Inhibited |
F54E12.4 (his-58) |
Description of "F54E12.4" |
his-58 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 351
Relative score: 0.954 (Best raw score= for Gene )
Specificity index: 0.263 |
Wormbase (BLAST) |
RNAi primary |
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External "F54E12.4" Links |
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Gene Inhibited |
F08G2.1 (his-44) |
Description of "F08G2.1" |
his-44 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 86
Relative score: 0.234 (Best raw score= for Gene )
Specificity index: 0.064 |
Wormbase (BLAST) |
RNAi secondary |
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External "F08G2.1" Links |
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Gene Inhibited |
ZK131.5 (his-11) |
Description of "ZK131.5" |
his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II. |
Evidence for Inhibition |
Sliding Window |
Raw score: 82
Relative score: 0.223 (Best raw score= for Gene )
Specificity index: 0.061 |
Wormbase (BLAST) |
RNAi secondary |
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External "ZK131.5" Links |
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Gene Inhibited |
B0035.8 (his-48) |
Description of "B0035.8" |
his-48 encodes an H2B histone; by homology, HIS-48 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-48 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
Evidence for Inhibition |
Sliding Window |
Raw score: 368
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.276 |
Wormbase (BLAST) |
RNAi primary |
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External "B0035.8" Links |
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Gene Inhibited |
F55G1.3 (his-62) |
Description of "F55G1.3" |
his-62 encodes an H2B histone. |
KOG Annotation  |
Histone H2B
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|
Evidence for Inhibition |
Sliding Window |
Raw score: 118
Relative score: 0.321 (Best raw score= for Gene )
Specificity index: 0.088 |
Wormbase (BLAST) |
RNAi secondary |
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External "F55G1.3" Links |
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Simmer:H02I12.6 Phenotypes |
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Larval |
Gro
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Adult |
Pvl Ste
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Simmer:H02I12.6 Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_H02I12.6 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of F54E12.4 |
Browse using GBrowse
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Gene Plot of F08G2.1 |
Browse using GBrowse
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Gene Plot of ZK131.5 |
Browse using GBrowse
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Gene Plot of H02I12.6 |
Browse using GBrowse
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Gene Plot of F55G1.3 |
Browse using GBrowse
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Gene Plot of B0035.8 |
Browse using GBrowse
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