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RNAi Experiment: Simmer:H02I12.8 Ace View of Simmer:H02I12.8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  H02I12.8 (cyp-31A2)
Description of "H02I12.8"  Associated GO Term : monooxygenase activity
KOG Annotation  Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:11403949..11405074)
Transcript overlap: 943 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 817
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.705
Wormbase (BLAST) RNAi primary
External "H02I12.8" Links  Wormbase NCBI
Gene Inhibited  Y17G9B.3 (cyp-31A3)
Description of "Y17G9B.3"  The Y17G9B.3 gene encodes a homolog of the human gene CYP7B1, which when mutated leads to pseudovitamin D deficiency rickets (OMIM:264700).
KOG Annotation  Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 90
Relative score: 0.11 (Best raw score= for Gene )
Specificity index: 0.078
Wormbase (BLAST) RNAi secondary
External "Y17G9B.3" Links  Wormbase NCBI
Gene Inhibited  Y62E10A.15 (cyp-31A5)
Evidence for Inhibition 
Sliding Window Raw score: 114
Relative score: 0.14 (Best raw score= for Gene )
Specificity index: 0.098
Wormbase (BLAST) RNAi primary
External "Y62E10A.15" Links  Wormbase NCBI
Gene Inhibited  C01F6.3 (cyp-31A1)
Evidence for Inhibition 
Sliding Window Raw score: 138
Relative score: 0.169 (Best raw score= for Gene )
Specificity index: 0.119
Wormbase (BLAST) RNAi secondary
External "C01F6.3" Links  Wormbase NCBI
Simmer:H02I12.8 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Simmer:H02I12.8 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_H02I12.8 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of H02I12.8 Browse using GBrowse
Gene Graph
Gene Plot of Y17G9B.3 Browse using GBrowse
Gene Graph
Gene Plot of Y62E10A.15 Browse using GBrowse
Gene Graph
Gene Plot of C01F6.3 Browse using GBrowse
Gene Graph