RNAi Card Page

RNAi Experiment: Simmer:K02D7.3

Ace View of Simmer:K02D7.3

Genes Inhibited

Gene Inhibited

K02D7.3 (col-101)

Description of "K02D7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (IV:325235..326429) Transcript overlap: 927 nt
Sliding Window	Raw score: 864 Relative score: 0.424 (Best raw score= for Gene ) Specificity index: 0.215
Wormbase (BLAST)	RNAi primary

External "K02D7.3" Links

Gene Inhibited

C50B6.4 (col-161)

Description of "C50B6.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 362
Relative score: 0.178 (Best raw score= for Gene )
Specificity index: 0.09

External "C50B6.4" Links

Gene Inhibited

F15H10.1 (col-12)

Description of "F15H10.1"

col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 61
Relative score: 0.03 (Best raw score= for Gene )
Specificity index: 0.015

External "F15H10.1" Links

Gene Inhibited

W05B2.6 (col-92)

Description of "W05B2.6"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 84
Relative score: 0.041 (Best raw score= for Gene )
Specificity index: 0.021

External "W05B2.6" Links

Gene Inhibited

W05B2.5 (col-93)

Description of "W05B2.5"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 105
Relative score: 0.051 (Best raw score= for Gene )
Specificity index: 0.026

External "W05B2.5" Links

Gene Inhibited

Y2H9A.3 (col-162)

Description of "Y2H9A.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 383
Relative score: 0.188 (Best raw score= for Gene )
Specificity index: 0.095

External "Y2H9A.3" Links

Gene Inhibited

W05B2.1 (col-94)

Description of "W05B2.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 126
Relative score: 0.062 (Best raw score= for Gene )
Specificity index: 0.031

External "W05B2.1" Links

Gene Inhibited

K04H4.1 (emb-9)

Description of "K04H4.1"

emb-9 encodes the alpha-1 chain of Type IV basement membrane collagen most closely equivalent to human COL4A1 (OMIM:120130) on the basis of biological function; EMB-9 forms heterotrimeric Type IV collagen with LET-2, the alpha-2-like chain, and is required for the assembly and/or secretion of LET-2; EMB-9 is essential for embryonic morphogenesis, particularly epidermal elongation, and for larval development; EMB-9 is expresed primarily by body wall muscles and some somatic cells of the gonad and is detected in nearly all basement membranes.

Evidence for Inhibition

Sliding Window

Raw score: 2810
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.507

External "K04H4.1" Links

Simmer:K02D7.3 Phenotypes