RNAi Experiment: Simmer:K02D7.3 |
Ace View of Simmer:K02D7.3
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Genes Inhibited |
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Gene Inhibited |
K02D7.3 (col-101) |
Description of "K02D7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:325235..326429)
Transcript overlap: 927 nt |
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Sliding Window |
Raw score: 864
Relative score: 0.424 (Best raw score= for Gene )
Specificity index: 0.215 |
Wormbase (BLAST) |
RNAi primary |
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External "K02D7.3" Links |
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Gene Inhibited |
C50B6.4 (col-161) |
Description of "C50B6.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 362
Relative score: 0.178 (Best raw score= for Gene )
Specificity index: 0.09 |
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External "C50B6.4" Links |
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Gene Inhibited |
F15H10.1 (col-12) |
Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 61
Relative score: 0.03 (Best raw score= for Gene )
Specificity index: 0.015 |
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External "F15H10.1" Links |
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Gene Inhibited |
W05B2.6 (col-92) |
Description of "W05B2.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 84
Relative score: 0.041 (Best raw score= for Gene )
Specificity index: 0.021 |
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External "W05B2.6" Links |
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Gene Inhibited |
W05B2.5 (col-93) |
Description of "W05B2.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 105
Relative score: 0.051 (Best raw score= for Gene )
Specificity index: 0.026 |
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External "W05B2.5" Links |
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Gene Inhibited |
Y2H9A.3 (col-162) |
Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 383
Relative score: 0.188 (Best raw score= for Gene )
Specificity index: 0.095 |
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External "Y2H9A.3" Links |
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Gene Inhibited |
W05B2.1 (col-94) |
Description of "W05B2.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 126
Relative score: 0.062 (Best raw score= for Gene )
Specificity index: 0.031 |
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External "W05B2.1" Links |
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Gene Inhibited |
K04H4.1 (emb-9) |
Description of "K04H4.1" |
emb-9 encodes the alpha-1 chain of Type IV basement membrane collagen most closely equivalent to human COL4A1 (OMIM:120130) on the basis of biological function; EMB-9 forms heterotrimeric Type IV collagen with LET-2, the alpha-2-like chain, and is required for the assembly and/or secretion of LET-2; EMB-9 is essential for embryonic morphogenesis, particularly epidermal elongation, and for larval development; EMB-9 is expresed primarily by body wall muscles and some somatic cells of the gonad and is detected in nearly all basement membranes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 2810
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.507 |
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External "K04H4.1" Links |
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Simmer:K02D7.3 Phenotypes |
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Larval |
Gro
|
Phenotype |
Unclassified
pale
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Simmer:K02D7.3 Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_K02D7.3 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of C50B6.4 |
Browse using GBrowse
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Gene Plot of F15H10.1 |
Browse using GBrowse
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Gene Plot of K02D7.3 |
Browse using GBrowse
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Gene Plot of W05B2.6 |
Browse using GBrowse
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Gene Plot of W05B2.5 |
Browse using GBrowse
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Gene Plot of Y2H9A.3 |
Browse using GBrowse
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Gene Plot of W05B2.1 |
Browse using GBrowse
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Gene Plot of K04H4.1 |
Browse using GBrowse
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