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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:K03E5.3:Screen_A Ace View of Simmer:K03E5.3:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K03E5.3
Description of "K03E5.3"  Associated GO Term : protein kinase activity
KOG Annotation  Protein kinase PCTAIRE and related kinases
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:3413025..3415149)
Transcript overlap: 519 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 414
Relative score: 0.676 (Best raw score= for Gene )
Specificity index: 0.36
Wormbase (BLAST) RNAi primary
External "K03E5.3" Links  Wormbase NCBI
Gene Inhibited  M04D5.1
Evidence for Inhibition 
Sliding Window Raw score: 612
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.533
External "M04D5.1" Links  Wormbase NCBI
Gene Inhibited  F36F12.4
KOG Annotation  Extracellular protein with conserved cysteines
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 123
Relative score: 0.201 (Best raw score= for Gene )
Specificity index: 0.107
External "F36F12.4" Links  Wormbase NCBI
Simmer:K03E5.3:Screen_A Phenotypes Help with Phenotypes
Larval  Lva
Adult  Bmd
Sma
Unc
Phenotype  Rol
Simmer:K03E5.3:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_K03E5.3 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of K03E5.3 Browse using GBrowse
Gene Graph
Gene Plot of M04D5.1 Browse using GBrowse
Gene Graph
Gene Plot of F36F12.4 Browse using GBrowse
Gene Graph