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RNAi Experiment: Simmer:K08D12.h Ace View of Simmer:K08D12.h
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K08D12.1 (pbs-1)
Description of "K08D12.1"  pbs-1 encodes a protease subunit with highest similarity to vertebrate proteasome subunit beta type 6 that affects fertility, embryonic viability, locomotion, and larval viability
KOG Annotation  20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:1708787..1711017)
Transcript overlap: 816 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 753
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.624
Wormbase (BLAST) RNAi primary
External "K08D12.1" Links  Wormbase NCBI
Gene Inhibited  K08D12.3
Description of "K08D12.3"  K08D12.3 is orthologous to the human gene UNNAMED PROTEIN PRODUCT (ZNF9; OMIM:116955), which when mutated leads to disease.
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:1708787..1711017)
Transcript overlap: 563 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 458
Relative score: 0.603 (Best raw score= for Gene )
Specificity index: 0.376
Wormbase (BLAST) RNAi primary
External "K08D12.3" Links  Wormbase NCBI
Simmer:K08D12.h Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Lva
Adult  Unc
Simmer:K08D12.h Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_K08D12.h (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of K08D12.3 Browse using GBrowse
Gene Graph
Gene Plot of K08D12.1 Browse using GBrowse
Gene Graph