Link to K09E3.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F07B7.6Link to C40A11.9geneMap Link to C07D8.3Link to C07D8.2RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F07B7.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to K06C4.15geneMap Link to C07D8.3Link to C07D8.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K06C4.15Link to K06C4.14RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F07B7.6geneMap
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RNAi Experiment: Simmer:K09E3.1 Ace View of Simmer:K09E3.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K09E3.1
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:17125450..17127258)
Transcript overlap: 1606 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1586
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.51
Wormbase (BLAST) RNAi primary
External "K09E3.1" Links  Wormbase NCBI
Gene Inhibited  C07D8.3
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 174
Relative score: 0.11 (Best raw score= for Gene )
Specificity index: 0.056
Wormbase (BLAST) RNAi primary
External "C07D8.3" Links  Wormbase NCBI
Gene Inhibited  F07B7.6
Description of "F07B7.6"  Associated GO Term : aspartic-type endopeptidase activity
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 597
Relative score: 0.376 (Best raw score= for Gene )
Specificity index: 0.192
Wormbase (BLAST) RNAi primary
External "F07B7.6" Links  Wormbase NCBI
Gene Inhibited  C07D8.2
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 183
Relative score: 0.115 (Best raw score= for Gene )
Specificity index: 0.059
Wormbase (BLAST) RNAi primary
External "C07D8.2" Links  Wormbase NCBI
Gene Inhibited  K06C4.15
Description of "K06C4.15"  Associated GO Term : aspartic-type endopeptidase activity
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 570
Relative score: 0.359 (Best raw score= for Gene )
Specificity index: 0.183
Wormbase (BLAST) RNAi primary
External "K06C4.15" Links  Wormbase NCBI
Simmer:K09E3.1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Lva
Adult  Unc
Simmer:K09E3.1 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_K09E3.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F07B7.6 Browse using GBrowse
Gene Graph
Gene Plot of C07D8.3 Browse using GBrowse
Gene Graph
Gene Plot of C07D8.2 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.15 Browse using GBrowse
Gene Graph
Gene Plot of K09E3.1 Browse using GBrowse
Gene Graph