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RNAi Experiment: Simmer:K12D12.1 Ace View of Simmer:K12D12.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K12D12.1
Description of "K12D12.1"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:11877879..11878905)
Transcript overlap: 1027 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1006
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.49
Wormbase (BLAST) RNAi primary
External "K12D12.1" Links  Wormbase NCBI
Gene Inhibited  Y46H3C.4
Description of "Y46H3C.4"  Associated GO Term : DNA binding
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 168
Relative score: 0.167 (Best raw score= for Gene )
Specificity index: 0.082
Wormbase (BLAST) RNAi secondary
External "Y46H3C.4" Links  Wormbase NCBI
Gene Inhibited  ZK1127.7
Description of "ZK1127.7"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 587
Relative score: 0.583 (Best raw score= for Gene )
Specificity index: 0.286
Wormbase (BLAST) RNAi primary
External "ZK1127.7" Links  Wormbase NCBI
Gene Inhibited  K08E5.1
Evidence for Inhibition 
Sliding Window Raw score: 291
Relative score: 0.289 (Best raw score= for Gene )
Specificity index: 0.142
Wormbase (BLAST) RNAi primary
External "K08E5.1" Links  Wormbase NCBI
Simmer:K12D12.1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:K12D12.1 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_K12D12.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y46H3C.4 Browse using GBrowse
Gene Graph
Gene Plot of K08E5.1 Browse using GBrowse
Gene Graph
Gene Plot of ZK1127.7 Browse using GBrowse
Gene Graph
Gene Plot of K12D12.1 Browse using GBrowse
Gene Graph