Link to R07E5.3Link to R07E5.14.2Link to R07E5.14.1Link to R07E5.2.1Link to R07E5.2.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to R07E5.3Link to R07E5.14.2Link to R07E5.14.1geneMap Link to R07E5.3Link to R07E5.14.2Link to R07E5.14.1Link to R07E5.2.1Link to R07E5.2.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to R07E5.3Link to R07E5.14.2Link to R07E5.14.1geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:R07E5.14 Ace View of Simmer:R07E5.14
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R07E5.3
Description of "R07E5.3"  The R07E5.3 gene encodes a homolog of SNF5/Ini1, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; R07E5.3 may be involved in asymmetric cell division of the T cells.
KOG Annotation  SWI-SNF chromatin remodeling complex, Snf5 subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4406264..4407116)
Transcript overlap: 496 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 412
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.5
External "R07E5.3" Links  Wormbase NCBI
Gene Inhibited  R07E5.14 (rnp-4)
Description of "R07E5.14"  rnp-4 encodes a putative member of the exon-exon junction complex, orthologous to Y14 in S. cerevisiae and TSUNAGI in D. melanogaster; RNP-4 is required for embryonic viability, fertility, vulval development, and cuticular integrity; however, rnp-4(RNAi) animals show no accumulation of poly(A)+ mRNA in their nuclei, indicating that RNP-4 is dispensable for mRNA export.
KOG Annotation  RNA-binding protein RBM8/Tsunagi (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4406264..4407116)
Transcript overlap: 496 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 412
Specificity index: 0.5
Wormbase (BLAST) RNAi primary
External "R07E5.14" Links  Wormbase NCBI
Simmer:R07E5.14 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:R07E5.14 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_R07E5.14 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of R07E5.14 Browse using GBrowse
Gene Graph
Gene Plot of R07E5.3 Browse using GBrowse
Gene Graph