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RNAi Experiment: Simmer:R10E11.2 Ace View of Simmer:R10E11.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R10E11.2 (vha-2)
Description of "R10E11.2"  vha-2 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) not required for embryonic viability; VHA-2 is 100% identical to VHA-3 with respect to amino acid sequence; vha-2 is located in a polycistronic region with vha-1 and it is expressed in the excretory cell, rectum, and a pair of cells posterior to the anus.
KOG Annotation  Vacuolar H+-ATPase V0 sector, subunits c/c'
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:9781895..9782765)
Transcript overlap: 617 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 575
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "R10E11.2" Links  Wormbase NCBI
Gene Inhibited  R10E11.8 (vha-1)
Description of "R10E11.8"  vha-1 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) and is required for embryogenesis and for oocyte ovulation, based on RNAi analysis; expressed in the excretory cells and the rectum of adult animals as well as in a pair of cells posterior to the anus.
KOG Annotation  Vacuolar H+-ATPase V0 sector, subunits c/c'
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 58 nt Explain types of evidence for RNAi inhibition
External "R10E11.8" Links  Wormbase NCBI
Simmer:R10E11.2 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:R10E11.2 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_R10E11.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of R10E11.8 Browse using GBrowse
Gene Graph
Gene Plot of R10E11.2 Browse using GBrowse
Gene Graph