Link to T05G5.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T05G5.3.1Link to T05G5.3.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T05G5.4Link to T05G5.5Link to T05G5.6.1Link to T05G5.6.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Simmer:T05G5.4:Screen Ace View of Simmer:T05G5.4:Screen
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T05G5.4
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:9748673..9749474)
Transcript overlap: 225 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 162
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "T05G5.4" Links  Wormbase NCBI
Gene Inhibited  T05G5.3 (cdk-1)
Description of "T05G5.3"  cdk-1 encodes a cyclin-dependent kinase, orthologous to and functionally interchangeable with CDC28 from S. cerevisiae; CDK-1 is required for cell-cycle progression through M phase in both meiosis and mitosis.
KOG Annotation  Protein kinase PCTAIRE and related kinases
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 75 nt Explain types of evidence for RNAi inhibition
External "T05G5.3" Links  Wormbase NCBI
Gene Inhibited  T05G5.5
Description of "T05G5.5"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  Similar to bacterial dephospho-CoA kinase
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 7 nt Explain types of evidence for RNAi inhibition
External "T05G5.5" Links  Wormbase NCBI
Simmer:T05G5.4:Screen Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Gro
Simmer:T05G5.4:Screen Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_T05G5.4 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of T05G5.4 Browse using GBrowse
Gene Graph
Gene Plot of T05G5.3 Browse using GBrowse
Gene Graph
Gene Plot of T05G5.5 Browse using GBrowse
Gene Graph