Link to T07H6.3aLink to T07H6.3b.2Link to T07H6.3b.1Link to T07H6.3b.3RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:T07H6.3 Ace View of Simmer:T07H6.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T07H6.3 (col-166)
Description of "T07H6.3"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:6280093..6281176)
Transcript overlap: 880 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 796
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.182
Wormbase (BLAST) RNAi primary
External "T07H6.3" Links  Wormbase NCBI
Gene Inhibited  F15H10.1 (col-12)
Description of "F15H10.1"  col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 172
Relative score: 0.225 (Best raw score= for Gene )
Specificity index: 0.041
External "F15H10.1" Links  Wormbase NCBI
Gene Inhibited  C44C10.1 (col-180)
Description of "C44C10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 171
Relative score: 0.224 (Best raw score= for Gene )
Specificity index: 0.041
Wormbase (BLAST) RNAi primary
External "C44C10.1" Links  Wormbase NCBI
Gene Inhibited  C24F3.6 (col-124)
Description of "C24F3.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 91
Relative score: 0.119 (Best raw score= for Gene )
Specificity index: 0.022
External "C24F3.6" Links  Wormbase NCBI
Gene Inhibited  F08G5.4 (col-130)
Description of "F08G5.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 95
Relative score: 0.124 (Best raw score= for Gene )
Specificity index: 0.023
External "F08G5.4" Links  Wormbase NCBI
Gene Inhibited  W01B6.7 (col-2)
Description of "W01B6.7"  col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 212
Relative score: 0.277 (Best raw score= for Gene )
Specificity index: 0.05
External "W01B6.7" Links  Wormbase NCBI
Gene Inhibited  C34F6.2 (col-178)
Description of "C34F6.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 472
Relative score: 0.617 (Best raw score= for Gene )
Specificity index: 0.112
External "C34F6.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.2 (col-167)
Description of "T10E10.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 535
Relative score: 0.699 (Best raw score= for Gene )
Specificity index: 0.127
Wormbase (BLAST) RNAi primary
External "T10E10.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.5 (col-169)
Description of "T10E10.5"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 503
Relative score: 0.658 (Best raw score= for Gene )
Specificity index: 0.12
Wormbase (BLAST) RNAi primary
External "T10E10.5" Links  Wormbase NCBI
Gene Inhibited  F15H10.2 (col-13)
Description of "F15H10.2"  col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 151
Relative score: 0.197 (Best raw score= for Gene )
Specificity index: 0.036
External "F15H10.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.1 (col-168)
Description of "T10E10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 557
Relative score: 0.728 (Best raw score= for Gene )
Specificity index: 0.132
Wormbase (BLAST) RNAi primary
External "T10E10.1" Links  Wormbase NCBI
Gene Inhibited  T10E10.6 (col-170)
Description of "T10E10.6"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 483
Relative score: 0.631 (Best raw score= for Gene )
Specificity index: 0.115
Wormbase (BLAST) RNAi primary
External "T10E10.6" Links  Wormbase NCBI
Simmer:T07H6.3 Phenotypes Help with Phenotypes
Larval  Gro
Adult  Bmd
Unc
Simmer:T07H6.3 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_T07H6.3 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F15H10.1 Browse using GBrowse
Gene Graph
Gene Plot of F08G5.4 Browse using GBrowse
Gene Graph
Gene Plot of C24F3.6 Browse using GBrowse
Gene Graph
Gene Plot of C44C10.1 Browse using GBrowse
Gene Graph
Gene Plot of W01B6.7 Browse using GBrowse
Gene Graph
Gene Plot of C34F6.2 Browse using GBrowse
Gene Graph
Gene Plot of T07H6.3 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.2 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.5 Browse using GBrowse
Gene Graph
Gene Plot of F15H10.2 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.1 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.6 Browse using GBrowse
Gene Graph