| RNAi Experiment: Simmer:T11F9.9:Repeat_a |
Ace View of Simmer:T11F9.9:Repeat_a
|
| Genes Inhibited |
 |
| Gene Inhibited |
T11F9.9 (col-157) |
| Description of "T11F9.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:11486695..11487824)
Transcript overlap: 848 nt |
|
| Sliding Window |
Raw score: 785
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.252 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T11F9.9" Links |
  |
| Gene Inhibited |
F55C10.3 (col-155) |
| Description of "F55C10.3" |
Associated GO Term : phosphate transport |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 337
Relative score: 0.429 (Best raw score= for Gene )
Specificity index: 0.108 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55C10.3" Links |
|
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 284
Relative score: 0.362 (Best raw score= for Gene )
Specificity index: 0.091 |
|
| External "Y54E10BL.2" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 315
Relative score: 0.401 (Best raw score= for Gene )
Specificity index: 0.101 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 94
Relative score: 0.12 (Best raw score= for Gene )
Specificity index: 0.03 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
F08G5.4 (col-130) |
| Description of "F08G5.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 169
Relative score: 0.215 (Best raw score= for Gene )
Specificity index: 0.054 |
|
| External "F08G5.4" Links |
|
| Gene Inhibited |
F30B5.1 (dpy-13) |
| Description of "F30B5.1" |
dpy-13 encodes a member of the collagen superfamily containing 20 copies of the collagen triple helix repeat; transcipt levels oscillate, peaking once during each larval stage. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 436
Relative score: 0.555 (Best raw score= for Gene )
Specificity index: 0.14 |
|
| External "F30B5.1" Links |
|
| Gene Inhibited |
T28F2.6 (col-50) |
| Description of "T28F2.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 291
Relative score: 0.371 (Best raw score= for Gene )
Specificity index: 0.093 |
|
| External "T28F2.6" Links |
|
| Gene Inhibited |
F55C10.2 (col-154) |
| Description of "F55C10.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 407
Relative score: 0.518 (Best raw score= for Gene )
Specificity index: 0.131 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55C10.2" Links |
|
| Simmer:T11F9.9:Repeat_a Phenotypes |
|
|
| Embryonic |
Emb Penetrance 20 - 40 % |
| Larval |
Lva
Lvl
|
| Adult |
Bmd
Dpy
|
| Simmer:T11F9.9:Repeat_a Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_T11F9.9 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of T11F9.9 |
Browse using GBrowse
|
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| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
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| Gene Plot of F55C10.3 |
Browse using GBrowse
|
 |
| Gene Plot of F08G5.4 |
Browse using GBrowse
|
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| Gene Plot of ZC513.8 |
Browse using GBrowse
|
 |
| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of F30B5.1 |
Browse using GBrowse
|
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| Gene Plot of T28F2.6 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.2 |
Browse using GBrowse
|
 |
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