Link to T11F9.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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to Y54E10BL.2RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F01G12.5aLink to F01G12.5b.2Link to F01G12.5b.1Link to F14F7.1.1Link to F23H12.4.1Link to F54C9.4Link to EGAP7.1Link to F36A4.10Link to F54B11.2Link to Y51H4A.9Link to T11F9.9Link to H06A10.2Link to T21B4.2Link to ZC373.7Link to F14F7.1.2Link to F23H12.4.2Link to F38A3.1Link to T28F2.8Link to K09H9.3Link to C09G5.5geneMap Link to EGAP7.1RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:T11F9.9:Screen Ace View of Simmer:T11F9.9:Screen
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T11F9.9 (col-157)
Description of "T11F9.9"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:11486695..11487824)
Transcript overlap: 848 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 785
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.252
Wormbase (BLAST) RNAi primary
External "T11F9.9" Links  Wormbase NCBI
Gene Inhibited  F55C10.3 (col-155)
Description of "F55C10.3"  Associated GO Term : phosphate transport
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 337
Relative score: 0.429 (Best raw score= for Gene )
Specificity index: 0.108
Wormbase (BLAST) RNAi primary
External "F55C10.3" Links  Wormbase NCBI
Gene Inhibited  Y54E10BL.2 (col-48)
Description of "Y54E10BL.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 284
Relative score: 0.362 (Best raw score= for Gene )
Specificity index: 0.091
External "Y54E10BL.2" Links  Wormbase NCBI
Gene Inhibited  EGAP7.1 (dpy-3)
Description of "EGAP7.1"  dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 315
Relative score: 0.401 (Best raw score= for Gene )
Specificity index: 0.101
External "EGAP7.1" Links  Wormbase NCBI
Gene Inhibited  ZC513.8 (col-43)
Description of "ZC513.8"  col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 94
Relative score: 0.12 (Best raw score= for Gene )
Specificity index: 0.03
External "ZC513.8" Links  Wormbase NCBI
Gene Inhibited  F08G5.4 (col-130)
Description of "F08G5.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 169
Relative score: 0.215 (Best raw score= for Gene )
Specificity index: 0.054
External "F08G5.4" Links  Wormbase NCBI
Gene Inhibited  F30B5.1 (dpy-13)
Description of "F30B5.1"  dpy-13 encodes a member of the collagen superfamily containing 20 copies of the collagen triple helix repeat; transcipt levels oscillate, peaking once during each larval stage.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 436
Relative score: 0.555 (Best raw score= for Gene )
Specificity index: 0.14
External "F30B5.1" Links  Wormbase NCBI
Gene Inhibited  T28F2.6 (col-50)
Description of "T28F2.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 291
Relative score: 0.371 (Best raw score= for Gene )
Specificity index: 0.093
External "T28F2.6" Links  Wormbase NCBI
Gene Inhibited  F55C10.2 (col-154)
Description of "F55C10.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 407
Relative score: 0.518 (Best raw score= for Gene )
Specificity index: 0.131
Wormbase (BLAST) RNAi primary
External "F55C10.2" Links  Wormbase NCBI
Simmer:T11F9.9:Screen Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Lva
Lvl
Simmer:T11F9.9:Screen Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_T11F9.9 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of T11F9.9 Browse using GBrowse
Gene Graph
Gene Plot of Y54E10BL.2 Browse using GBrowse
Gene Graph
Gene Plot of F55C10.3 Browse using GBrowse
Gene Graph
Gene Plot of F08G5.4 Browse using GBrowse
Gene Graph
Gene Plot of ZC513.8 Browse using GBrowse
Gene Graph
Gene Plot of EGAP7.1 Browse using GBrowse
Gene Graph
Gene Plot of F30B5.1 Browse using GBrowse
Gene Graph
Gene Plot of T28F2.6 Browse using GBrowse
Gene Graph
Gene Plot of F55C10.2 Browse using GBrowse
Gene Graph