Link to T12D8.6Link to T12D8.7Link to T12D8.5.2Link to T12D8.5.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T12D8.5.2Link to T12D8.7Link to T12D8.5.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:T12D8.7 Ace View of Simmer:T12D8.7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T12D8.7 (taf-9)
Description of "T12D8.7"  Associated GO Term : DNA binding
KOG Annotation  Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:13623753..13625394)
Transcript overlap: 526 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 463
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "T12D8.7" Links  Wormbase NCBI
Gene Inhibited  T12D8.5
Evidence for Inhibition 
ePCR Transcript overlap: 10 nt Explain types of evidence for RNAi inhibition
External "T12D8.5" Links  Wormbase NCBI
Simmer:T12D8.7 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Gro
Adult  Lon
Unc
Phenotype  Unclassified Thin
Simmer:T12D8.7 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_T12D8.7 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of T12D8.7 Browse using GBrowse
Gene Graph
Gene Plot of T12D8.5 Browse using GBrowse
Gene Graph