Link to T20F5.2Link to T20F5.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:T20F5.2:Screen_A Ace View of Simmer:T20F5.2:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T20F5.2 (pbs-4)
Description of "T20F5.2"  pbs-4 encodes a B-type subunit of the 26S proteasome's 20S protease core particle; by homology, PBS-4 is predicted to function in ATP/ubiquitin-dependent nonlysosomal protein degradation; loss of pbs-4 activity via RNAi indicates that, in C. elegans, PBS-4 is required for embryonic, germline, and larval development.
KOG Annotation  20S proteasome, regulatory subunit beta type PSMB2/PRE1
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:3908486..3909598)
Transcript overlap: 696 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 612
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "T20F5.2" Links  Wormbase NCBI
Simmer:T20F5.2:Screen_A Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Adult  Ste
Simmer:T20F5.2:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_T20F5.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of T20F5.2 Browse using GBrowse
Gene Graph