RNAi Experiment: Simmer:T23D8.6:Screen_A |
Ace View of Simmer:T23D8.6:Screen_A
|
Genes Inhibited |
|
Gene Inhibited |
T23D8.6 (his-68) |
Description of "T23D8.6" |
his-68 encodes an H2A histone. |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (I:9988963..9989715)
Transcript overlap: 487 nt |
|
Sliding Window |
Raw score: 466
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.493 |
Wormbase (BLAST) |
RNAi primary |
|
External "T23D8.6" Links |
|
Gene Inhibited |
F54E12.5 (his-57) |
Description of "F54E12.5" |
his-57 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 112
Specificity index: 0.119 |
Wormbase (BLAST) |
RNAi secondary |
|
External "F54E12.5" Links |
|
Gene Inhibited |
B0035.7 (his-47) |
Description of "B0035.7" |
his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
Evidence for Inhibition |
Sliding Window |
Raw score: 112
Relative score: 0.24 (Best raw score= for Gene )
Specificity index: 0.119 |
Wormbase (BLAST) |
RNAi secondary |
|
External "B0035.7" Links |
|
Gene Inhibited |
H02I12.7 (his-65) |
Description of "H02I12.7" |
his-65 encodes an H2A histone. |
KOG Annotation  |
Histone 2A
|
|
Evidence for Inhibition |
Sliding Window |
Raw score: 91
Relative score: 0.195 (Best raw score= for Gene )
Specificity index: 0.096 |
Wormbase (BLAST) |
RNAi secondary |
|
External "H02I12.7" Links |
|
Gene Inhibited |
F08G2.2 (his-43) |
Description of "F08G2.2" |
his-43 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 70
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.074 |
Wormbase (BLAST) |
RNAi secondary |
|
External "F08G2.2" Links |
|
Gene Inhibited |
F55G1.10 (his-61) |
Description of "F55G1.10" |
his-61 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 94
Relative score: 0.202 (Best raw score= for Gene )
Specificity index: 0.099 |
Wormbase (BLAST) |
RNAi secondary |
|
External "F55G1.10" Links |
|
Simmer:T23D8.6:Screen_A Phenotypes |
|
|
Embryonic |
Emb Penetrance 100 % |
Simmer:T23D8.6:Screen_A Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_T23D8.6 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of T23D8.6 |
Browse using GBrowse
|
|
Gene Plot of B0035.7 |
Browse using GBrowse
|
|
Gene Plot of F54E12.5 |
Browse using GBrowse
|
|
Gene Plot of H02I12.7 |
Browse using GBrowse
|
|
Gene Plot of F08G2.2 |
Browse using GBrowse
|
|
Gene Plot of F55G1.10 |
Browse using GBrowse
|
|