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RNAi Experiment: Simmer:W04D2.5 Ace View of Simmer:W04D2.5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  W04D2.5
Description of "W04D2.5"  This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
KOG Annotation  Mitochondrial/chloroplast ribosomal protein S11
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:12495714..12497324)
Transcript overlap: 755 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 713
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.88
Wormbase (BLAST) RNAi primary
External "W04D2.5" Links  Wormbase NCBI
Gene Inhibited  W04D2.3 (inx-11)
Description of "W04D2.3"  inx-11 encodes a predicted member of the innexin family; expressed in the pharynx, a few head neurons, the tail hypodermis, posterior intestine and in some vulval and uterine muscles.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (V:12495714..12497324)
Transcript overlap: 98 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 77
Relative score: 0.137 (Best raw score= for Gene )
Specificity index: 0.12
External "W04D2.3" Links  Wormbase NCBI
Simmer:W04D2.5 Phenotypes Help with Phenotypes
Larval  Gro
Simmer:W04D2.5 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_W04D2.5 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of W04D2.3 Browse using GBrowse
Gene Graph
Gene Plot of W04D2.5 Browse using GBrowse
Gene Graph