| RNAi Experiment: Simmer:W05B2.6:Screen |
Ace View of Simmer:W05B2.6:Screen
|
| Genes Inhibited |
 |
| Gene Inhibited |
W05B2.6 (col-92) |
| Description of "W05B2.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (III:10981934..10983131)
Transcript overlap: 976 nt |
|
| Sliding Window |
Raw score: 913
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.217 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W05B2.6" Links |
  |
| Gene Inhibited |
T28C6.4 (col-117) |
| Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 142
Specificity index: 0.034 |
|
| External "T28C6.4" Links |
|
| Gene Inhibited |
F38A3.1 (col-81) |
| Description of "F38A3.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 331
Relative score: 0.363 (Best raw score= for Gene )
Specificity index: 0.079 |
|
| External "F38A3.1" Links |
|
| Gene Inhibited |
K02D7.3 (col-101) |
| Description of "K02D7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 174
Relative score: 0.191 (Best raw score= for Gene )
Specificity index: 0.041 |
|
| External "K02D7.3" Links |
|
| Gene Inhibited |
T28C6.6 (col-3) |
| Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 142
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.034 |
|
| External "T28C6.6" Links |
|
| Gene Inhibited |
F52B11.4 (col-133) |
| Description of "F52B11.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 85
Relative score: 0.093 (Best raw score= for Gene )
Specificity index: 0.02 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F52B11.4" Links |
|
| Gene Inhibited |
F57B1.4 (col-160) |
| Description of "F57B1.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 160
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.038 |
|
| External "F57B1.4" Links |
|
| Gene Inhibited |
W05B2.5 (col-93) |
| Description of "W05B2.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 609
Relative score: 0.667 (Best raw score= for Gene )
Specificity index: 0.145 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W05B2.5" Links |
|
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 483
Relative score: 0.529 (Best raw score= for Gene )
Specificity index: 0.115 |
|
| External "F23H12.4" Links |
|
| Gene Inhibited |
W05B2.1 (col-94) |
| Description of "W05B2.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 790
Relative score: 0.865 (Best raw score= for Gene )
Specificity index: 0.188 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W05B2.1" Links |
|
| Gene Inhibited |
C29F4.1 (col-125) |
| Description of "C29F4.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 161
Relative score: 0.176 (Best raw score= for Gene )
Specificity index: 0.038 |
|
| External "C29F4.1" Links |
|
| Gene Inhibited |
F41F3.4 (col-139) |
| Description of "F41F3.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 211
Relative score: 0.231 (Best raw score= for Gene )
Specificity index: 0.05 |
|
| External "F41F3.4" Links |
|
| Simmer:W05B2.6:Screen Phenotypes |
|
|
| Adult |
Bmd
Dpy
Rup
Unc
|
| Simmer:W05B2.6:Screen Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_W05B2.6 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of T28C6.4 |
Browse using GBrowse
|
 |
| Gene Plot of F38A3.1 |
Browse using GBrowse
|
 |
| Gene Plot of K02D7.3 |
Browse using GBrowse
|
 |
| Gene Plot of W05B2.6 |
Browse using GBrowse
|
 |
| Gene Plot of F52B11.4 |
Browse using GBrowse
|
 |
| Gene Plot of T28C6.6 |
Browse using GBrowse
|
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| Gene Plot of F57B1.4 |
Browse using GBrowse
|
 |
| Gene Plot of W05B2.5 |
Browse using GBrowse
|
 |
| Gene Plot of F23H12.4 |
Browse using GBrowse
|
 |
| Gene Plot of W05B2.1 |
Browse using GBrowse
|
 |
| Gene Plot of C29F4.1 |
Browse using GBrowse
|
 |
| Gene Plot of F41F3.4 |
Browse using GBrowse
|
 |
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