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RNAi Experiment: Simmer:W07A8.3 Ace View of Simmer:W07A8.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  W07A8.3 (dnj-25)
Description of "W07A8.3"  The dnj-25 (Ce-auxilin) gene is required in vivo for clathrin-mediated endocytosis and for normal development.
KOG Annotation  Auxilin-like protein and related proteins containing DnaJ domain
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:20734100..20735751)
Transcript overlap: 665 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 602
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "W07A8.3" Links  Wormbase NCBI
Gene Inhibited  W07A8.5 (srxa-6)
Description of "W07A8.5"  Associated GO Term : molecular_function unknown
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (V:20734100..20735751)
Transcript overlap: 103 nt
Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "W07A8.5" Links  Wormbase NCBI
Simmer:W07A8.3 Phenotypes Help with Phenotypes
Larval  Lva
Simmer:W07A8.3 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_W07A8.3 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of W07A8.3 Browse using GBrowse
Gene Graph
Gene Plot of W07A8.5 Browse using GBrowse
Gene Graph