| RNAi Experiment: Simmer:W09H1.2 |
Ace View of Simmer:W09H1.2
|
| Genes Inhibited |
 |
| Gene Inhibited |
F54E12.1 (his-55) |
| Description of "F54E12.1" |
his-55 encodes an H3 histone; by homology, HIS-55 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-55 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 138
Relative score: 0.39 (Best raw score= for Gene )
Specificity index: 0.161 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.1" Links |
  |
| Gene Inhibited |
F22B3.2 (his-63) |
| Description of "F22B3.2" |
his-63 encodes an H3 histone; by homology, HIS-63 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-63 is a replication-dependent histone locus. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 187
Relative score: 0.528 (Best raw score= for Gene )
Specificity index: 0.218 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F22B3.2" Links |
|
| Gene Inhibited |
B0035.10 (his-45) |
| Description of "B0035.10" |
his-45 encodes an H3 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 179
Relative score: 0.506 (Best raw score= for Gene )
Specificity index: 0.209 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.10" Links |
|
| Gene Inhibited |
W09H1.2 (his-73) |
| Description of "W09H1.2" |
his-73 encodes an H3 histone; by homology, HIS-73 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-73 is a replication-dependent histone locus. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 354
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.413 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W09H1.2" Links |
|
| Simmer:W09H1.2 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 90 % |
| Larval |
Gro
|
| Simmer:W09H1.2 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_W09H1.2 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F22B3.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54E12.1 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.10 |
Browse using GBrowse
|
 |
| Gene Plot of W09H1.2 |
Browse using GBrowse
|
 |
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