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RNAi Experiment: Simmer:Y105E8C.n:Screen_A Ace View of Simmer:Y105E8C.n:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y105E8A.9 (apg-1)
Description of "Y105E8A.9"  The apt-1 gene encodes an adaptin: specifically, it encodes an ortholog of the gamma subunit of adaptor protein complex 1 (AP-1).
KOG Annotation  Vesicle coat complex AP-1, gamma subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:14405830..14407957)
Transcript overlap: 1039 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 955
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y105E8A.9" Links  Wormbase NCBI
Simmer:Y105E8C.n:Screen_A Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Larval  Lva
Simmer:Y105E8C.n:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y105E8C.n (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y105E8A.9 Browse using GBrowse
Gene Graph