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RNAi Experiment: Simmer:Y119D3_446.a Ace View of Simmer:Y119D3_446.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y82E9BR.3
Description of "Y82E9BR.3"  Associated GO Term : hydrogen-transporting ATP synthase activity, rotational mechanism
KOG Annotation  Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:1419189..1420896)
Transcript overlap: 603 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 540
Relative score: 0.707 (Best raw score= for Gene )
Specificity index: 0.414
Wormbase (BLAST) RNAi primary
External "Y82E9BR.3" Links  Wormbase NCBI
Gene Inhibited  Y82E9BR.16
Description of "Y82E9BR.16"  Associated GO Term : transporter activity
KOG Annotation  Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:1419189..1420896)
Transcript overlap: 597 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 576
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.586
Wormbase (BLAST) RNAi primary
External "Y82E9BR.16" Links  Wormbase NCBI
Simmer:Y119D3_446.a Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Lva
Simmer:Y119D3_446.a Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y119D3_446.a (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y82E9BR.3 Browse using GBrowse
Gene Graph
Gene Plot of Y82E9BR.16 Browse using GBrowse
Gene Graph