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RNAi Experiment: Simmer:Y38F2A_5743.f Ace View of Simmer:Y38F2A_5743.f
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38F2AL.3 (vha-11)
Description of "Y38F2AL.3"  Associated GO Term : ATP binding
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:2313403..2314799)
Transcript overlap: 325 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 262
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.578
Wormbase (BLAST) RNAi primary
External "Y38F2AL.3" Links  Wormbase NCBI
Gene Inhibited  Y38F2AL.4 (vha-3)
Description of "Y38F2AL.4"  vha-3 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) not required for embryonic viability; VHA-3 is 100% identical to VHA-2 with respect to amino acid sequence; expressed predominantly in the gastrointestinal and hypodermal cells and also in the excretory cell.
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:2313403..2314799)
Transcript overlap: 212 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 191
Relative score: 0.729 (Best raw score= for Gene )
Specificity index: 0.422
External "Y38F2AL.4" Links  Wormbase NCBI
Simmer:Y38F2A_5743.f Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Lva
Simmer:Y38F2A_5743.f Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y38F2A_5743.f (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y38F2AL.4 Browse using GBrowse
Gene Graph
Gene Plot of Y38F2AL.3 Browse using GBrowse
Gene Graph