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RNAi Experiment: Simmer:Y39G10A_246.c:Screen_B Ace View of Simmer:Y39G10A_246.c:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y39G10AR.8
Description of "Y39G10AR.8"  Associated GO Term : GTP binding
KOG Annotation  Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:2313516..2315796)
Transcript overlap: 1339 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1255
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.953
Wormbase (BLAST) RNAi primary
External "Y39G10AR.8" Links  Wormbase NCBI
Gene Inhibited  Y45G12B.2
Description of "Y45G12B.2"  Associated GO Term : ubiquitin-protein ligase activity
KOG Annotation  Predicted E3 ubiquitin ligase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 62
Relative score: 0.049 (Best raw score= for Gene )
Specificity index: 0.047
External "Y45G12B.2" Links  Wormbase NCBI
Simmer:Y39G10A_246.c:Screen_B Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Lva
Simmer:Y39G10A_246.c:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y39G10A_246.c (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y39G10AR.8 Browse using GBrowse
Gene Graph
Gene Plot of Y45G12B.2 Browse using GBrowse
Gene Graph