Link to Y41D4B.19bLink to Y41D4B.14Link to Y41D4B.19aRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y71H2AM.2RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F45H10.1.2Link to F45H10.1.1Link to F45H10.2.2Link to F45H10.2.1RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y61A9LA.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Simmer:Y41D4A_3073.a Ace View of Simmer:Y41D4A_3073.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y41D4B.19 (npp-8)
Description of "Y41D4B.19"  Associated GO Term : nucleocytoplasmic transporter activity
KOG Annotation  Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:1583856..1586130)
Transcript overlap: 681 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 639
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.726
Wormbase (BLAST) RNAi primary
External "Y41D4B.19" Links  Wormbase NCBI
Gene Inhibited  Y71H2AM.2
Description of "Y71H2AM.2"  Associated GO Term : nucleic acid binding
KOG Annotation  Uncharacterized conserved protein, contains C4-type Zn-finger
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 94
Relative score: 0.147 (Best raw score= for Gene )
Specificity index: 0.107
External "Y71H2AM.2" Links  Wormbase NCBI
Gene Inhibited  F45H10.1 (alh-7)
Description of "F45H10.1"  alh-7 encodes an ortholog of the human gene DJ73M23.2 (NAD+-DEPENDENT SUCCINIC SEMIALDEHYDE DEHYDROGENASE; ALDH5A1), which when mutated leads to SSADH deficiency (OMIM:271980).
KOG Annotation  Aldehyde dehydrogenase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 70
Relative score: 0.11 (Best raw score= for Gene )
Specificity index: 0.08
External "F45H10.1" Links  Wormbase NCBI
Gene Inhibited  Y61A9LA.9
Evidence for Inhibition 
Sliding Window Raw score: 77
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.087
Wormbase (BLAST) RNAi primary
External "Y61A9LA.9" Links  Wormbase NCBI
Simmer:Y41D4A_3073.a Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:Y41D4A_3073.a Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y41D4A_3073.a (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y71H2AM.2 Browse using GBrowse
Gene Graph
Gene Plot of F45H10.1 Browse using GBrowse
Gene Graph
Gene Plot of Y41D4B.19 Browse using GBrowse
Gene Graph
Gene Plot of Y61A9LA.9 Browse using GBrowse
Gene Graph