Link to Y45F10D.4Link to Y45F10D.11RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y45F10D.3Link to Y45F10D.11Link to Y45F10D.4Link to Y45F10D.10RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:Y45F10D.4 Ace View of Simmer:Y45F10D.4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y45F10D.4
Description of "Y45F10D.4"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  Iron binding protein involved in Fe-S cluster formation
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:13783663..13784721)
Transcript overlap: 546 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 441
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.865
Wormbase (BLAST) RNAi primary
External "Y45F10D.4" Links  Wormbase NCBI
Gene Inhibited  Y45F10D.11
Description of "Y45F10D.11"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
Evidence for Inhibition 
ePCR Transcript overlap: 69 nt Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 69
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.135
Wormbase (BLAST) RNAi primary
External "Y45F10D.11" Links  Wormbase NCBI
Simmer:Y45F10D.4 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Lva
Simmer:Y45F10D.4 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y45F10D.4 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y45F10D.4 Browse using GBrowse
Gene Graph
Gene Plot of Y45F10D.11 Browse using GBrowse
Gene Graph