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RNAi Experiment: Simmer:Y46G5.f Ace View of Simmer:Y46G5.f
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y46G5A.6
Description of "Y46G5A.6"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
KOG Annotation  RNA helicase BRR2, DEAD-box superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:12744477..12746657)
Transcript overlap: 1204 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1120
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.724
Wormbase (BLAST) RNAi primary
External "Y46G5A.6" Links  Wormbase NCBI
Gene Inhibited  Y46G5A.4
Description of "Y46G5A.4"  Associated GO Term : nucleotide binding
KOG Annotation  RNA helicase BRR2, DEAD-box superfamily
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 426
Relative score: 0.38 (Best raw score= for Gene )
Specificity index: 0.276
Wormbase (BLAST) RNAi primary
External "Y46G5A.4" Links  Wormbase NCBI
Simmer:Y46G5.f Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Lva
Adult  Unc
Simmer:Y46G5.f Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y46G5.f (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y46G5A.4 Browse using GBrowse
Gene Graph
Gene Plot of Y46G5A.6 Browse using GBrowse
Gene Graph