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RNAi Experiment: Simmer:Y47D3B.10 Ace View of Simmer:Y47D3B.10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y47D3B.10 (dpy-18)
Description of "Y47D3B.10"  An alpha subunit of prolyl-4-hydroxylase which is a procollagen modifying enzyme required for exoskeleton formation, morphogenesis and maintenance of body shape; it is expressed throughout the hypodermis and certain head and posterior neurons.
KOG Annotation  Prolyl 4-hydroxylase alpha subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:11374224..11375908)
Transcript overlap: 889 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 805
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y47D3B.10" Links  Wormbase NCBI
Simmer:Y47D3B.10 Phenotypes Help with Phenotypes
Adult  Dpy
Simmer:Y47D3B.10 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y47D3B.10 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y47D3B.10 Browse using GBrowse
Gene Graph