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RNAi Experiment: Simmer:Y49E10.1 Ace View of Simmer:Y49E10.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y49E10.1 (rpt-6)
Description of "Y49E10.1"  rpt-6 encodes a triple A ATPase that is a subunit of the 26S proteasome 19S regulatory particle (RP) base subcomplex; RPT-6 is required for embryonic and larval development and by homology, is predicted to function in unfolding protein substrates and translocating them into the core proteolytic particle (CP) of the proteasome.
KOG Annotation  26S proteasome regulatory complex, ATPase RPT6
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12370433..12371606)
Transcript overlap: 803 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 742
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y49E10.1" Links  Wormbase NCBI
Simmer:Y49E10.1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Larval  Lva
Adult  Unc
Simmer:Y49E10.1 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y49E10.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y49E10.1 Browse using GBrowse
Gene Graph