Link to Y53C10A.3RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentgeneMap Link to T12C9.6Link to T12C9.3RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to E03H4.7Link to E03H4.8RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F38E11.5geneMap Link to T07C12.13RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C50H2.10Link to C50H2.12geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:Y53C10A.3:Screen_A Ace View of Simmer:Y53C10A.3:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y53C10A.3
Description of "Y53C10A.3"  Associated GO Term : transcription factor activity
KOG Annotation  Heat shock transcription factor
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:11969370..11972071)
Transcript overlap: 733 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 649
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.441
Wormbase (BLAST) RNAi primary
External "Y53C10A.3" Links  Wormbase NCBI
Gene Inhibited  T12C9.3 (twk-2)
Description of "T12C9.3"  twk-2 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains; the precise role of TWK-2 in C. elegans development and/or behavior is not yet known, but TWK-2 may function redundantly with other TWK channels; TWK-2 is expressed in a subset of neurons.
KOG Annotation  Tandem pore domain K+ channel
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 179
Relative score: 0.276 (Best raw score= for Gene )
Specificity index: 0.122
External "T12C9.3" Links  Wormbase NCBI
Gene Inhibited  E03H4.8
Description of "E03H4.8"  Associated GO Term : protein transporter activity
KOG Annotation  Vesicle coat complex COPI, beta' subunit
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 336
Relative score: 0.518 (Best raw score= for Gene )
Specificity index: 0.228
External "E03H4.8" Links  Wormbase NCBI
Gene Inhibited  T07C12.5 (srj-34)
Evidence for Inhibition 
Sliding Window Raw score: 309
Relative score: 0.476 (Best raw score= for Gene )
Specificity index: 0.21
External "T07C12.5" Links  Wormbase NCBI
Simmer:Y53C10A.3:Screen_A Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Lva
Adult  Sma
Unc
Simmer:Y53C10A.3:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y53C10A.3 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of E03H4.8 Browse using GBrowse
Gene Graph
Gene Plot of T12C9.3 Browse using GBrowse
Gene Graph
Gene Plot of Y53C10A.3 Browse using GBrowse
Gene Graph
Gene Plot of T07C12.5 Browse using GBrowse
Gene Graph