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RNAi Experiment: Simmer:Y54E5A.4:Screen_B Ace View of Simmer:Y54E5A.4:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y54E5A.4 (npp-4)
KOG Annotation  Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:14704656..14706873)
Transcript overlap: 953 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 890
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y54E5A.4" Links  Wormbase NCBI
Gene Inhibited  Y54E5A.5
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 7 nt Explain types of evidence for RNAi inhibition
External "Y54E5A.5" Links  Wormbase NCBI
Simmer:Y54E5A.4:Screen_B Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Gro
Simmer:Y54E5A.4:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y54E5A.4 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y54E5A.4 Browse using GBrowse
Gene Graph
Gene Plot of Y54E5A.5 Browse using GBrowse
Gene Graph