Link to Y55F3AM.15Link to Y55F3AR.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y55F3AM.15RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y71H2AM.2RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F45H10.1.2Link to F45H10.1.1Link to F45H10.2.2Link to F45H10.2.1RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y73B3A.3RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to M70.4geneMap
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RNAi Experiment: Simmer:Y55F3A_750.e Ace View of Simmer:Y55F3A_750.e
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y55F3AR.3
Description of "Y55F3AR.3"  Associated GO Term : protein binding
KOG Annotation  Chaperonin complex component, TCP-1 theta subunit (CCT8)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:1083882..1088085)
Transcript overlap: 818 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 756
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.578
Wormbase (BLAST) RNAi primary
External "Y55F3AR.3" Links  Wormbase NCBI
Gene Inhibited  Y55F3AM.15 (csn-4)
Description of "Y55F3AM.15"  csn-4 encodes a protein with similarity to human COP9 proteasome subunit 4.
KOG Annotation  COP9 signalosome, subunit CSN4
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (IV:1083882..1088085)
Transcript overlap: 333 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 270
Relative score: 0.357 (Best raw score= for Gene )
Specificity index: 0.206
Wormbase (BLAST) RNAi primary
External "Y55F3AM.15" Links  Wormbase NCBI
Gene Inhibited  Y71H2AM.2
Description of "Y71H2AM.2"  Associated GO Term : nucleic acid binding
KOG Annotation  Uncharacterized conserved protein, contains C4-type Zn-finger
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 88
Relative score: 0.116 (Best raw score= for Gene )
Specificity index: 0.067
External "Y71H2AM.2" Links  Wormbase NCBI
Gene Inhibited  F45H10.1 (alh-7)
Description of "F45H10.1"  alh-7 encodes an ortholog of the human gene DJ73M23.2 (NAD+-DEPENDENT SUCCINIC SEMIALDEHYDE DEHYDROGENASE; ALDH5A1), which when mutated leads to SSADH deficiency (OMIM:271980).
KOG Annotation  Aldehyde dehydrogenase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 114
Relative score: 0.151 (Best raw score= for Gene )
Specificity index: 0.087
External "F45H10.1" Links  Wormbase NCBI
Gene Inhibited  Y73B3A.3
Evidence for Inhibition 
Sliding Window Raw score: 80
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.061
External "Y73B3A.3" Links  Wormbase NCBI
Simmer:Y55F3A_750.e Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Lva
Adult  Unc
Simmer:Y55F3A_750.e Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  smd_Y55F3A_750.e (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y71H2AM.2 Browse using GBrowse
Gene Graph
Gene Plot of F45H10.1 Browse using GBrowse
Gene Graph
Gene Plot of Y73B3A.3 Browse using GBrowse
Gene Graph
Gene Plot of Y55F3AM.15 Browse using GBrowse
Gene Graph
Gene Plot of Y55F3AR.3 Browse using GBrowse
Gene Graph