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RNAi Experiment: Simmer:Y56A3A.18 Ace View of Simmer:Y56A3A.18
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y56A3A.18
Description of "Y56A3A.18"  Associated GO Term : nucleic acid binding
KOG Annotation  U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:11917814..11918756)
Transcript overlap: 403 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 361
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y56A3A.18" Links  Wormbase NCBI
Gene Inhibited  Y56A3A.20 (ccf-1)
Description of "Y56A3A.20"  a homolog of subunit 7 of CCR4-NOT transcription complex from S. cerevisiae.
KOG Annotation  mRNA deadenylase subunit
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 35 nt Explain types of evidence for RNAi inhibition
External "Y56A3A.20" Links  Wormbase NCBI
Simmer:Y56A3A.18 Phenotypes Help with Phenotypes
Larval  Lva
Simmer:Y56A3A.18 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y56A3A.18 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y56A3A.18 Browse using GBrowse
Gene Graph
Gene Plot of Y56A3A.20 Browse using GBrowse
Gene Graph