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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:Y65B4A_185.c:Screen_A Ace View of Simmer:Y65B4A_185.c:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y65B4A.9
Description of "Y65B4A.9"  Associated GO Term : protein kinase activity
KOG Annotation  Casein kinase (serine/threonine/tyrosine protein kinase)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:665379..666366)
Transcript overlap: 347 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 264
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.729
Wormbase (BLAST) RNAi primary
External "Y65B4A.9" Links  Wormbase NCBI
Gene Inhibited  M04D5.1
Evidence for Inhibition 
Sliding Window Raw score: 98
Relative score: 0.371 (Best raw score= for Gene )
Specificity index: 0.271
External "M04D5.1" Links  Wormbase NCBI
Simmer:Y65B4A_185.c:Screen_A Phenotypes Help with Phenotypes
Adult  Ste brood size (6 out of 10)
Simmer:Y65B4A_185.c:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y65B4A_185.c (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of M04D5.1 Browse using GBrowse
Gene Graph
Gene Plot of Y65B4A.9 Browse using GBrowse
Gene Graph