Link to Y71F9AM.6.2Link to Y71F9AM.6.1Link to Y71F9AM.5.1Link to Y71F9AM.5.2Link to Y71F9AM.4aRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y71F9AM.6.2Link to Y71F9AM.5.2Link to Y71F9AM.5.1geneMap Link to Y71F9AL.1Link to Y71F9AM.6.2Link to Y71F9AM.6.3Link to Y71F9AM.6.1Link to Y71F9AM.5.1Link to Y71F9AM.5.2Link to Y71F9AM.4aRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y71F9AM.6.2Link to Y71F9AM.5.2Link to Y71F9AM.5.1geneMap
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RNAi Experiment: Simmer:Y71F9A_279.b:Screen_A Ace View of Simmer:Y71F9A_279.b:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y71F9AM.5 (nxt-1)
Description of "Y71F9AM.5"  Associated GO Term : protein transporter activity
KOG Annotation  RNA export factor NXT1
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:2929711..2930417)
Transcript overlap: 437 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 355
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.524
Wormbase (BLAST) RNAi primary
External "Y71F9AM.5" Links  Wormbase NCBI
Gene Inhibited  Y71F9AM.6
KOG Annotation  Translocon-associated complex TRAP, alpha subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (I:2929711..2930417)
Transcript overlap: 360 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 278
Relative score: 0.908 (Best raw score= for Gene )
Specificity index: 0.476
External "Y71F9AM.6" Links  Wormbase NCBI
Simmer:Y71F9A_279.b:Screen_A Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Lva
Adult  Unc
Simmer:Y71F9A_279.b:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y71F9A_279.b (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y71F9AM.6 Browse using GBrowse
Gene Graph
Gene Plot of Y71F9AM.5 Browse using GBrowse
Gene Graph