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RNAi Experiment: Simmer:Y75B8A.2 Ace View of Simmer:Y75B8A.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y75B8A.2 (nob-1)
Description of "Y75B8A.2"  The nob-1 gene encodes one of three C. elegans posterior group homeodomain transcription factors orthologous to Drosophila Abd-B and the vertebrate Hox9-13 proteins; NOB-1, along with an additional posterior Hox ortholog, PHP-3, is required during embryogenesis for proper fate specification and morphogenesis of cells in the posterior region.
KOG Annotation  Transcription factor Abd-B, contains HOX domain
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12083229..12084181)
Transcript overlap: 440 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 398
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y75B8A.2" Links  Wormbase NCBI
Simmer:Y75B8A.2 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Gro
Adult  Bmd
Simmer:Y75B8A.2 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_Y75B8A.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y75B8A.2 Browse using GBrowse
Gene Graph