| RNAi Experiment: Simmer:Y75B8A.27:Repeat_a |
Ace View of Simmer:Y75B8A.27:Repeat_a
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| Genes Inhibited |
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| Gene Inhibited |
Y75B8A.27 (pqn-92) |
| Description of "Y75B8A.27" |
The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (III:12307781..12310053)
Transcript overlap: 962 nt |
|
| Sliding Window |
Raw score: 895
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.768 |
| Wormbase (BLAST) |
RNAi primary |
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| External "Y75B8A.27" Links |
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| Gene Inhibited |
Y75B8A.2 (nob-1) |
| Description of "Y75B8A.2" |
The nob-1 gene encodes one of three C. elegans posterior group homeodomain transcription factors orthologous to Drosophila Abd-B and the vertebrate Hox9-13 proteins; NOB-1, along with an additional posterior Hox ortholog, PHP-3, is required during embryogenesis for proper fate specification and morphogenesis of cells in the posterior region. |
| KOG Annotation |
Transcription factor Abd-B, contains HOX domain
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| Evidence for Inhibition |
| Sliding Window |
Raw score: 101
Relative score: 0.113 (Best raw score= for Gene )
Specificity index: 0.087 |
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| External "Y75B8A.2" Links |
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| Gene Inhibited |
Y47D3A.5 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 102
Relative score: 0.114 (Best raw score= for Gene )
Specificity index: 0.087 |
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| External "Y47D3A.5" Links |
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| Gene Inhibited |
C01B4.2 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 68
Relative score: 0.076 (Best raw score= for Gene )
Specificity index: 0.058 |
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| External "C01B4.2" Links |
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| Simmer:Y75B8A.27:Repeat_a Phenotypes |
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| Larval |
Lva
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| Adult |
Unc
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| Simmer:Y75B8A.27:Repeat_a Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_Y75B8A.27 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of Y75B8A.2 |
Browse using GBrowse
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| Gene Plot of Y75B8A.27 |
Browse using GBrowse
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| Gene Plot of Y47D3A.5 |
Browse using GBrowse
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| Gene Plot of C01B4.2 |
Browse using GBrowse
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