Link to ZK1010.1.1Link to ZK1010.1.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F25B5.4a.3Link to F25B5.4a.1Link to F25B5.4a.2Link to F25B5.4cgeneMap Link to F25B5.4a.2Link to F25B5.4cLink to F25B5.4a.1Link to F25B5.4a.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:ZK1010.1 Ace View of Simmer:ZK1010.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK1010.1 (ubq-2)
Description of "ZK1010.1"  ubq-2 encodes a bifunctional protein that contains two domains; an N-terminal ubiquitin peptide, and a C-terminal large ribosomal subunit protein L40 peptide.
KOG Annotation  Ubiquitin/60s ribosomal protein L40 fusion
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12977412..12978378)
Transcript overlap: 494 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 431
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.845
Wormbase (BLAST) RNAi primary
External "ZK1010.1" Links  Wormbase NCBI
Gene Inhibited  F25B5.4 (ubq-1)
Description of "F25B5.4"  Associated GO Term : protein modification
Evidence for Inhibition 
Sliding Window Raw score: 66
Relative score: 0.184 (Best raw score= for Gene )
Specificity index: 0.155
External "F25B5.4" Links  Wormbase NCBI
Simmer:ZK1010.1 Phenotypes Help with Phenotypes
Adult  Ste brood size (1 out of 5)
Simmer:ZK1010.1 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_ZK1010.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F25B5.4 Browse using GBrowse
Gene Graph
Gene Plot of ZK1010.1 Browse using GBrowse
Gene Graph