Link to ZK1127.7RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to K12D12.1geneMap Link to Y46H3C.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K12D12.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F32A11.4Link to ZK1127.7geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to K12D12.1Link to F32A11.4geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:ZK1127.8 Ace View of Simmer:ZK1127.8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK1127.7
Description of "ZK1127.7"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:7039720..7040897)
Transcript overlap: 1178 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1136
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.538
Wormbase (BLAST) RNAi primary
External "ZK1127.7" Links  Wormbase NCBI
Gene Inhibited  Y46H3C.4
Description of "Y46H3C.4"  Associated GO Term : DNA binding
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 149
Relative score: 0.131 (Best raw score= for Gene )
Specificity index: 0.071
Wormbase (BLAST) RNAi secondary
External "Y46H3C.4" Links  Wormbase NCBI
Gene Inhibited  K12D12.1
Description of "K12D12.1"  This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial.
KOG Annotation  DNA topoisomerase type II
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 584
Relative score: 0.514 (Best raw score= for Gene )
Specificity index: 0.277
Wormbase (BLAST) RNAi primary
External "K12D12.1" Links  Wormbase NCBI
Gene Inhibited  K08E5.1
Evidence for Inhibition 
Sliding Window Raw score: 243
Relative score: 0.214 (Best raw score= for Gene )
Specificity index: 0.115
Wormbase (BLAST) RNAi primary
External "K08E5.1" Links  Wormbase NCBI
Simmer:ZK1127.8 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Simmer:ZK1127.8 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_ZK1127.8 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of Y46H3C.4 Browse using GBrowse
Gene Graph
Gene Plot of K08E5.1 Browse using GBrowse
Gene Graph
Gene Plot of K12D12.1 Browse using GBrowse
Gene Graph
Gene Plot of ZK1127.7 Browse using GBrowse
Gene Graph